Rounding out the front row of the grid is Italian superstar Valentino Rossi after his finished just over a half a second behind Marquez at the end of Q2.
After finishing in seventh place at the Australian GP last year, Rossi knows it is once again going to be tough to make the podium in 2013 with so many riders riding fast and also due to the fact that most teams including his own are unsure which way to go with their tyre selection for the race.
"Phillip Island is great this year, the warm weather and the new asphalt is fantastic and starting the race one row one is great." Rossi enthused. "Every lap I have been right in my element.
"I am quite happy because I have been competitive during practice, especially this afternoon," he added.
"We had some confusion with the tyres and the situation for tomorrow is not very clear," Rossi continued regarding the tyre situation. "We concentrated on today and qualifying and I am happy with the front row for sure, it is the race in a row we will start from the front row, it means we are working well
"I fell good with the bike, but I know that tomorrow as usual will be very difficult as Marc and Jorge are very very fast but I expect also Pedrosa, Bautista and Crutchlow will ride hard, but will we try to do our maximum to fight for the podium," he concluded.
Go@Fun Honda Grisini rider Alvaro Bautista missed the front row by just .066 of a second and is well in contention of a podium finish tomorrow, while Dani Pedrosa rounded out the top five a further .035 of a second behind Bautista.
Australia's Bryan Staring will start his home race in 21st position after posting a best lap of 1'31.775, while Damian Cudlin who is racing aboar a Paul Bird Motorsport PBM machine will start two positions further back in 23rd with a lap time just over 1 second slower than Staring.